The Fruits of Our Labor

Duvall Lab Publications

2018

Burke, S. V., M. Ungerer, & M. Duvall. 2018. Investigation of large mitochondrial sequences in the Paspalum lineage (Panicoideae; Poaceae). BMC Plant Biology 18: 152. https://doi.org/10.1186/s12870-018-1379-1

Saarela, J.M., Burke, S.V., Wysocki, W.P., Barrett, M.D., Clark, L.G., Craine, J.M., Peterson, P.M., Soreng, R.J., Vorontsova, M.S. and Duvall, M.R., 2018. A 250 plastome phylogeny of the grass family (Poaceae): topological support under different data partitions. PeerJ 6, p.e4299. 10.7717/peerj.4299

N. Shrestha, N., P. H. Weber, S. V. Burke, W. P. Wysocki, M. R. Duvall, and J. J. Bujarski. 2018. Next Generation Sequencing reveals packaging of host RNAs by Brome mosaic virus. Virus Research 252: 82-90. 10.1016/j.virusres.2018.05.011

2017

Barber, N. A., Jones, H. P., Duvall, M. R., Wysocki, W. P., Hansen, M. J., & Gibson, D. J. (2017). Phylogenetic diversity is maintained despite richness losses over time in restored tallgrass prairie plant communities. Journal of Applied Ecology, 54(1), 137-144.

DiGiovanni, J. P., Wysocki, W. P., Burke, S. V., Duvall, M. R., & Barber, N. A. (2017). The role of hemiparasitic plants: influencing tallgrass prairie quality, diversity, and structure. Restoration Ecology, 25(3), 405-413.

Duvall, M. R., Yadav, S. R., Burke, S. V., & Wysocki, W. P. (2017). Grass plastomes reveal unexpected paraphyly with endemic species of Micrairoideae from India and new haplotype markers in Arundinoideae. American Journal of Botany 104(2), 286-295.

Orton, L. M., Burke, S. V., Wysocki, W. P., & Duvall, M. R. (2017). Plastid phylogenomic study of species within the genus Zea: rates and patterns of three classes of microstructural changes. Current genetics, 63(2), 311-323.

2016

Attigala, L., Wysocki, W. P., Duvall, M. R., & Clark, L. G. (2016). Phylogenetic estimation and morphological evolution of Arundinarieae (Bambusoideae: Poaceae) based on plastome phylogenomic analysis. Molecular phylogenetics and evolution, 101, 111-121.

Burke, S.V., Wysocki, W.P., Zuloaga, F.O., Craine, J.M., Pires, J.C., Edger, P.P., Mayfield-Jones, D., Clark, L.G., Kelchner, S.A., & Duvall, M. R. (2016). Evolutionary relationships in panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae). BMC plant biology, 16(1), 140.

Burke, S. V., Lin, C. S., Wysocki, W. P., Clark, L. G., & Duvall, M. R. (2016). Phylogenomics and plastome evolution of tropical forest grasses (Leptaspis, Streptochaeta: Poaceae). Frontiers in plant science, 7.

Duvall, M. R., Fisher, A. E., Columbus, J. T., Ingram, A. L., Wysocki, W. P., Burke, S. V., ... & Kelchner, S. A. (2016). Phylogenomics and plastome evolution of the chloridoid grasses (Chloridoideae: Poaceae). International Journal of Plant Sciences, 177(3), 235-246.

Jaeger, C. P., Duvall, M. R., Swanson, B. J., Phillips, C. A., Dreslik, M. J., Baker, S. J., & King, R. B. (2016). Microsatellite and major histocompatibility complex variation in an endangered rattlesnake, the Eastern Massasauga (Sistrurus catenatus). Ecology and evolution, 6(12), 3991-4003.

Wysocki, W. P., Burke, S. V., Swingley, W. D., & Duvall, M. R. (2016). The first complete plastid genome from Joinvilleaceae (J. ascendens; Poales) shows unique and unpredicted rearrangements. PloS one, 11(9), e0163218.

Wysocki, W. P., Ruiz-Sanchez, E., Yin, Y., & Duvall, M. R. (2016). The floral transcriptomes of four bamboo species (Bambusoideae; Poaceae): support for common ancestry among woody bamboos. BMC genomics, 17(1), 384.

2015

Cotton, J.L., Wysocki, W.P., Clark, L.G., Kelchner, S.A., Pires, J.C., Edger, P.P., Mayfield-Jones, D. & Duvall, M. R. (2015). Resolving deep relationships of PACMAD grasses: a phylogenomic approach. BMC plant biology, 15, 178-178.

Saarela, J.M., Wysocki, W.P., Barrett, C.F., Soreng, R.J., Davis, J.I., Clark, L.G., Kelchner, S.A., Pires, J.C., Edger, P.P., Mayfield, D.R. & Duvall, M. R. (2015). Plastid phylogenomics of the cool-season grass subfamily: clarification of relationships among early-diverging tribes. AoB Plants, 7.

Wysocki, W. P., Clark, L. G., Attigala, L., Ruiz-Sanchez, E., & Duvall, M. R. (2015). Evolution of the bamboos (Bambusoideae; Poaceae): a full plastome phylogenomic analysis. BMC evolutionary biology, 15(1), 50.

2014

Burke, S. V., Clark, L. G., Triplett, J. K., Grennan, C. P., & Duvall, M. R. (2014). Biogeography and phylogenomics of new world Bambusoideae (Poaceae), revisited. American journal of botany, 101(5), 886-891.

Dertien, J. R., & Duvall, M. R. (2014). Perspectives on the systematics and phylogenetics of Guaiacum (Zygophyllaceae): complexities in conservation of endangered hardwoods due to fragmentation, introgression, and intermittent gene flow. Revista Mexicana de Biodiversidad, 85(3), 808-822.

Jones, S. S., Burke, S. V., & Duvall, M. R. (2014). Phylogenomics, molecular evolution, and estimated ages of lineages from the deep phylogeny of Poaceae. Plant systematics and evolution, 300(6), 1421-1436.

Wysocki, W.P., Clark, L.G., Kelchner, S.A., Burke, S.V., Pires, J.C., Edger, P.P., Mayfield, D.R., Triplett, J.K., Columbus, J.T., Ingram, A.L. & Duvall, M. R. (2014). A multi-step comparison of short-read full plastome sequence assembly methods in grasses. Taxon, 63(4), 899-910.

2013

Ray, J.W., King, R.B., Duvall, M.R., Robinson, J.W., Jaeger, C.P., Dreslik, M.J., Swanson, B.J. & Mulkerin, D. (2013). Genetic analysis and captive breeding program design for the eastern massasauga Sistrurus catenatus catenatus. Journal of Fish and Wildlife Management, 4(1), 104-113.

2012

Burke, S. V., Grennan, C. P., & Duvall, M. R. (2012). Plastome sequences of two New World bamboos—Arundinaria gigantea and Cryptochloa strictiflora (Poaceae)—extend phylogenomic understanding of Bambusoideae. American Journal of Botany, 99(12), 1951-1961.

2010

Morris, L. M., & Duvall, M. R. (2010). The chloroplast genome of Anomochloa marantoidea (Anomochlooideae; Poaceae) comprises a mixture of grass-like and unique features. American Journal of Botany, 97(4), 620-627.

Wusterbarth, T. L., King, R. B., Grayburn, W. S., Duvall, M. R., & Burghardt, G. M. (2010). Phylogenetically widespread multiple paternity in New World natricine snakes.

2009

Dertien, J. R., & Duvall, M. R. (2009). Biogeography and divergence in Guaiacum sanctum (Zygophyllaceae) revealed in chloroplast DNA: Implications for conservation in the Florida Keys. Biotropica, 41(1), 120-127.

Leseberg, C. H., & Duvall, M. R. (2009). The complete chloroplast genome of Coix lacryma-jobi and a comparative molecular evolutionary analysis of plastomes in cereals. Journal of Molecular Evolution, 69(4), 311-318.

2008

Duvall, M. R., Robinson, J. W., Mattson, J. G., & Moore, A. (2008). Phylogenetic analyses of two mitochondrial metabolic genes sampled in parallel from angiosperms find fundamental interlocus incongruence. American journal of botany, 95(7), 871-884.

Leseberg, C. H., Eissler, C. L., Wang, X., Johns, M. A., Duvall, M. R., & Mao, L. (2008). Interaction study of MADS-domain proteins in tomato. Journal of experimental botany, 59(8), 2253-2265.

2022

Pischl, P.H., S.V. Burke, C.P. Jaeger, and M.R. Duvall. The Persistence of State-Listed Endangered and Threatened Seed Plants in Populated Illinois Landscapes. Castanea 87(2):160-176.

Shrestha, N., Duvall, M.R. and Bujarski, J.J., 2022. Variability among the Isolates of Broad Bean Mottle Virus and Encapsidation of Host RNAs. Pathogens, 11(7): 817. https://doi.org/10.3390/pathogens11070817

2021

Chalopin, D., L.G. Clark, W.P. Wysocki, M. Park, M.R. Duvall, and J.L. Bennetzen. Integrated genomic analyses from low-depth sequencing help resolve phylogenetic incongruence in the bamboos (Poaceae: Bambusoideae). Frontiers in Plant Science 2021:1916. https://www.frontiersin.org/articles/10.3389/fpls.2021.725728/full

Orton, Lauren. M., P. B. Sánchez, M. P. Nissenbaum, P. M. Peterson, A. Quintanar, R. Soreng, K. Romaschenko, and M. R. Duvall 2021. A 313 plastome phylogenomic analysis of Pooideae: Exploring relationships among the largest subfamily of grasses. Molecular Phylogenetics and Evolution 159, 2021, p. 107110. doi: https://doi.org/10.1016/j.ympev.2021.107110.

Qiu F., S. Bachle, R. Estes, M.R. Duvall, J.B. Nippert, M.C. Ungerer. Transcriptional responses to water stress and recovery in a drought-tolerant fescue wild grass (Festuca ovina; Poaceae). Genome. 64(1). https://doi.org/10.1139/gen-2020-0055

2020

Bianconi, M.E., Hackel, J., Vorontsova, M.S., Alberti, A., Arthan, W., Burke, S.V., Duvall, M.R., Kellogg, E.A., Lavergne, S., McKain, M.R. and Meunier, A., 2020. Continued adaptation of C4 photosynthesis after an initial burst of changes in the Andropogoneae grasses. Systematic Biology p.syz066. https://doi.org/10.1093/sysbio/syz066

Duvall, M. R., Sean V. Burke, and Dylan C. Clark 2020. Plastome phylogenomics of Poaceae – alternate topologies depend on alignment gaps. Botanical Journal of the Linnean Society 192(1): 9 - 20. https://doi.org/10.1093/botlinnean/boz060

Moore, A., M. E. Lenczewski, R. M. Leal-Bautista, and M. R. Duvall 2020. Groundwater microbial diversity and antibiotic resistance linked to human population density in Yucatan Peninsula, Mexico. Canadian Journal of Microbiology 66(1): 46 - 58. http://dx.doi.org/10.1139/cjm-2019-0173.

Orton, L.M., E. Fitzek, X. Feng, W.S. Grayburn, J.P. Mower, C. Zhang, M.R. Duvall, Y. Yin. 2020. Zygnema circumcarinatum UTEX 1559 chloroplast and mitochondrial genomes provide insight into land plant evolution. Journal of Experimental Botany 71(11): 3361 - 3373. https://doi.org/10.1093/jxb/eraa149

Pischl, P. H., S. V. Burke, E. M. Bach, and M. R. Duvall. 2020. Plastome phylogenomics and phylogenetic diversity of endangered and threatened grassland species in the family Poaceae. Ecology and Evolution 10(14): 7602 - 7615. https://doi.org/10.1002/ece3.6484

(Invited blog accompanies this paper at: https://ecologyandevolution.blog/blog/)

2019

Fitzek, E., L. M. Orton, S. Entwistle, S. W. Grayburn, C. Ausland, M. R. Duvall and Y. Yin. 2019. Cell wall enzymes in Zygnema circumcarinatum UTEX 1559 respond to osmotic stress in a plant-like fashion. Frontiers in Plant Science. DOI: 10.3389/fpls.2019.00732

Gallaher, Timothy J., Dean C. Adams, Lakshmi Attigala, Sean V. Burke, Joseph M. Craine, Melvin R. Duvall, Phillip C. Klahs, Emma Sherratt, William P. Wysocki, Lynn G. Clark. 2019. Leaf shape tracks transitions across forest-grassland boundaries in the grass family (Poaceae). Evolution. DOI: 10.1111/evo.13722

Orton, L. M., S. V. Burke, and M. R. Duvall. 2019. Plastome phylogenomics and characterization of rare genomic changes as taxonomic markers in plastome groups 1 and 2 Poeae (Pooideae; Poaceae). PeerJ. DOI: 10.7717/peerj.6959